{ "opencollection": "1.0.0", "info": { "name": "Amazon Omics AnnotationStore Sequencestore API", "version": "1.0.0" }, "request": { "auth": { "type": "apikey", "key": "Authorization", "value": "{{Authorization}}", "placement": "header" } }, "items": [ { "info": { "name": "Sequencestore", "type": "folder" }, "items": [ { "info": { "name": "Amazon HealthOmics Abort Multipart Read Set Upload", "type": "http" }, "http": { "method": "DELETE", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/upload/:uploadId/abort", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": " The sequence store ID for the store involved in the multipart upload. " }, { "name": "uploadId", "value": "", "type": "path", "description": " The ID for the multipart upload. " } ] }, "docs": " Stops a multipart upload. " }, { "info": { "name": "Amazon HealthOmics Batch Delete Read Set", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/readset/batch/delete", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The read sets' sequence store ID." } ], "body": { "type": "json", "data": "{}" } }, "docs": "Deletes one or more read sets." }, { "info": { "name": "Amazon HealthOmics Complete Multipart Read Set Upload", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/upload/:uploadId/complete", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": " The sequence store ID for the store involved in the multipart upload. " }, { "name": "uploadId", "value": "", "type": "path", "description": " The ID for the multipart upload. " } ], "body": { "type": "json", "data": "{}" } }, "docs": " Concludes a multipart upload once you have uploaded all the components. " }, { "info": { "name": "Amazon HealthOmics Create Multipart Read Set Upload", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/upload", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": " The sequence store ID for the store that is the destination of the multipart uploads. " } ], "body": { "type": "json", "data": "{}" } }, "docs": " Begins a multipart read set upload. " }, { "info": { "name": "Amazon HealthOmics Create Sequence Store", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "body": { "type": "json", "data": "{}" } }, "docs": "Creates a sequence store." }, { "info": { "name": "Amazon HealthOmics Get Sequence Store", "type": "http" }, "http": { "method": "GET", "url": "http://omics.{region}.amazonaws.com/sequencestore/:id", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "id", "value": "", "type": "path", "description": "The store's ID." } ] }, "docs": "Gets information about a sequence store." }, { "info": { "name": "Amazon HealthOmics Delete Sequence Store", "type": "http" }, "http": { "method": "DELETE", "url": "http://omics.{region}.amazonaws.com/sequencestore/:id", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "id", "value": "", "type": "path", "description": "The sequence store's ID." } ] }, "docs": "Deletes a sequence store." }, { "info": { "name": "Amazon HealthOmics Get Read Set", "type": "http" }, "http": { "method": "GET", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/readset/:id#partNumber", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "id", "value": "", "type": "path", "description": "The read set's ID." }, { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The read set's sequence store ID." }, { "name": "file", "value": "", "type": "query", "description": "The file to retrieve." }, { "name": "partNumber", "value": "", "type": "query", "description": "The part number to retrieve." } ] }, "docs": "Gets a file from a read set." }, { "info": { "name": "Amazon HealthOmics Get Read Set Activation Job", "type": "http" }, "http": { "method": "GET", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/activationjob/:id", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "id", "value": "", "type": "path", "description": "The job's ID." }, { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The job's sequence store ID." } ] }, "docs": "Gets information about a read set activation job." }, { "info": { "name": "Amazon HealthOmics Get Read Set Export Job", "type": "http" }, "http": { "method": "GET", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/exportjob/:id", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The job's sequence store ID." }, { "name": "id", "value": "", "type": "path", "description": "The job's ID." } ] }, "docs": "Gets information about a read set export job." }, { "info": { "name": "Amazon HealthOmics Get Read Set Import Job", "type": "http" }, "http": { "method": "GET", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/importjob/:id", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "id", "value": "", "type": "path", "description": "The job's ID." }, { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The job's sequence store ID." } ] }, "docs": "Gets information about a read set import job." }, { "info": { "name": "Amazon HealthOmics Get Read Set Metadata", "type": "http" }, "http": { "method": "GET", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/readset/:id/metadata", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "id", "value": "", "type": "path", "description": "The read set's ID." }, { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The read set's sequence store ID." } ] }, "docs": "Gets details about a read set." }, { "info": { "name": "Amazon HealthOmics List Multipart Read Set Uploads", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/uploads", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": " The Sequence Store ID used for the multipart uploads. " }, { "name": "maxResults", "value": "", "type": "query", "description": " The maximum number of multipart uploads returned in a page. " }, { "name": "nextToken", "value": "", "type": "query", "description": " Next token returned in the response of a previous ListMultipartReadSetUploads call. Used to get the next page of results. " } ] }, "docs": " Lists all multipart read set uploads and their statuses. " }, { "info": { "name": "Amazon HealthOmics List Read Set Activation Jobs", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/activationjobs", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The read set's sequence store ID." }, { "name": "maxResults", "value": "", "type": "query", "description": "The maximum number of read set activation jobs to return in one page of results." }, { "name": "nextToken", "value": "", "type": "query", "description": "Specify the pagination token from a previous request to retrieve the next page of results." } ], "body": { "type": "json", "data": "{}" } }, "docs": "Retrieves a list of read set activation jobs." }, { "info": { "name": "Amazon HealthOmics List Read Set Export Jobs", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/exportjobs", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The jobs' sequence store ID." }, { "name": "maxResults", "value": "", "type": "query", "description": "The maximum number of jobs to return in one page of results." }, { "name": "nextToken", "value": "", "type": "query", "description": "Specify the pagination token from a previous request to retrieve the next page of results." } ], "body": { "type": "json", "data": "{}" } }, "docs": "Retrieves a list of read set export jobs." }, { "info": { "name": "Amazon HealthOmics List Read Set Import Jobs", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/importjobs", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "maxResults", "value": "", "type": "query", "description": "The maximum number of jobs to return in one page of results." }, { "name": "nextToken", "value": "", "type": "query", "description": "Specify the pagination token from a previous request to retrieve the next page of results." }, { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The jobs' sequence store ID." } ], "body": { "type": "json", "data": "{}" } }, "docs": "Retrieves a list of read set import jobs." }, { "info": { "name": "Amazon HealthOmics List Read Set Upload Parts", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/upload/:uploadId/parts", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": " The Sequence Store ID used for the multipart uploads. " }, { "name": "uploadId", "value": "", "type": "path", "description": " The ID for the initiated multipart upload. " }, { "name": "maxResults", "value": "", "type": "query", "description": " The maximum number of read set upload parts returned in a page. " }, { "name": "nextToken", "value": "", "type": "query", "description": " Next token returned in the response of a previous ListReadSetUploadPartsRequest call. Used to get the next page of results. " } ], "body": { "type": "json", "data": "{}" } }, "docs": " This operation will list all parts in a requested multipart upload for a sequence store. " }, { "info": { "name": "Amazon HealthOmics List Read Sets", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/readsets", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The jobs' sequence store ID." }, { "name": "maxResults", "value": "", "type": "query", "description": "The maximum number of read sets to return in one page of results." }, { "name": "nextToken", "value": "", "type": "query", "description": "Specify the pagination token from a previous request to retrieve the next page of results." } ], "body": { "type": "json", "data": "{}" } }, "docs": "Retrieves a list of read sets." }, { "info": { "name": "Amazon HealthOmics Start Read Set Activation Job", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/activationjob", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The read set's sequence store ID." } ], "body": { "type": "json", "data": "{}" } }, "docs": "Activates an archived read set. To reduce storage charges, Amazon Omics archives unused read sets after 30 days." }, { "info": { "name": "Amazon HealthOmics Start Read Set Export Job", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/exportjob", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The read set's sequence store ID." } ], "body": { "type": "json", "data": "{}" } }, "docs": "Exports a read set to Amazon S3." }, { "info": { "name": "Amazon HealthOmics Start Read Set Import Job", "type": "http" }, "http": { "method": "POST", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/importjob", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": "The read set's sequence store ID." } ], "body": { "type": "json", "data": "{}" } }, "docs": "Starts a read set import job." }, { "info": { "name": "Amazon HealthOmics Upload Read Set Part", "type": "http" }, "http": { "method": "PUT", "url": "http://omics.{region}.amazonaws.com/sequencestore/:sequenceStoreId/upload/:uploadId/part#partSource&partNumber", "headers": [ { "name": "X-Amz-Content-Sha256", "value": "" }, { "name": "X-Amz-Date", "value": "" }, { "name": "X-Amz-Algorithm", "value": "" }, { "name": "X-Amz-Credential", "value": "" }, { "name": "X-Amz-Security-Token", "value": "" }, { "name": "X-Amz-Signature", "value": "" }, { "name": "X-Amz-SignedHeaders", "value": "" } ], "params": [ { "name": "sequenceStoreId", "value": "", "type": "path", "description": " The Sequence Store ID used for the multipart upload. " }, { "name": "uploadId", "value": "", "type": "path", "description": " The ID for the initiated multipart upload. " }, { "name": "partSource", "value": "", "type": "query", "description": " The source file for an upload part. " }, { "name": "partNumber", "value": "", "type": "query", "description": " The number of the part being uploaded. " } ], "body": { "type": "json", "data": "{}" } }, "docs": " This operation uploads a specific part of a read set. If you upload a new part using a previously used part number, the previously uploaded part will be overwritten. " } ] } ], "bundled": true }